PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g027850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 796aa    MW: 90470 Da    PI: 7.7219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g027850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.59.4e-2713106189
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 
                     f  v t+sdv+k++rlvlp++ ae+h    ++++++++ l+++d++g+ W+++++y+++ g+yv+tkGW++Fvk+++L++gD+v F++  g+++
  Csa11g027850.1  13 FHIVVTSSDVGKLNRLVLPRQDAERHfrpySSNNQNGTLLSFQDKNGKMWRFRYSYWNTLGSYVMTKGWSRFVKEKKLEAGDMVSFERGlGDES 106
                     667889************************66777899*************************************************6544444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-337117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-269103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-2211100No hitNo description
PROSITE profilePS5086314.18413117IPR003340B3 DNA binding domain
SMARTSM010191.9E-1813119IPR003340B3 DNA binding domain
PfamPF023624.7E-2413107IPR003340B3 DNA binding domain
PROSITE profilePS5169711.284167262IPR006936ALOG domain
SuperFamilySSF522006.02E-9301387IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.5E-7302389IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525403.98E-7422539IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520477.38E-27544784No hitNo description
Gene3DG3DSA:3.80.10.103.3E-24550766IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003672.3618643IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367680664690IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036764755780IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MMTVPAPKKE HMFHIVVTSS DVGKLNRLVL PRQDAERHFR PYSSNNQNGT LLSFQDKNGK  60
MWRFRYSYWN TLGSYVMTKG WSRFVKEKKL EAGDMVSFER GLGDESERWK LYIDWSHRRD  120
MSLVQSHQFG DFGYKNFNFG TPSQYSNRFH TEGKAFSGEG STITTTTTES ESTVDCNAFR  180
SFLRTHGLTL SGCKAKDIID FLCVQKDLGD SNALVGRLSA ACERSGIKPK DNPFRSLAVI  240
RYLQMVRRIS GETECILAFS CNDILDVEET SFIRSILTEL QEQEVTPWTF NLSGRGNLDL  300
EMFYRCSVVI MVLSNTSARS SHFLDNLVAI MEHWKAKDLV VIPVYFMVTL SDLEDQFELV  360
QLQYRKYVQA DRVQKWKAAI AELASIGGHL WTYGTQFILA KEVVRSACLR LYLKDSDNLV  420
RILAFLDHPQ PSDVEIEGIW GMAGIVSQSK GLRHIRDDFF SKVFGEEKLS IGACETKSSF  480
MRDWFQNKAI LVVLDDVSNA RDAEYVVGGF GWFSHGHRII LTSRRKQVLI QCKGTEAIEG  540
ISLDASDLTC ELTPTVFGKM HRLRLLKFYC STSENQCKLS LPQGLDTLPD ELRLLHWENY  600
PLKNLPQKFN PENLVENLGK LKKINLSHSR NLTDILMLSE ALNLEHIDLE GCKSLFDVST  660
IPRCGKLISL NMKDCSHLRS LPGMVDLTSL KLLNISGCSE IEEIKDFAPN LTELYLAGTA  720
IRELPKSIEN LTELGTLDLE NCRRLQQLPF GIENLRCIVE LNLSGCTSLG LKGMETLVRS  780
PYPLLSLFPL RKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-351012311122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436480.11e-164PREDICTED: probable WRKY transcription factor 19
TrEMBLA0A078EB861e-135A0A078EB86_BRANA; BnaC01g11870D protein
STRINGAl_scaffold_0007_22121e-134(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-68B3 family protein